Research Software Engineer for Computational Mass Spectrometry

Join Our Innovative Research Team

The Functional Genomics Center Zurich (FGCZ) is a state-of-the-art research and training facility, a collaboration between ETH Zurich and the University of Zurich. We provide top-tier research services and project support to the Zurich life science research community, utilizing the latest technologies and expertise in omics research.

About the Role

If you are passionate about computational mass spectrometry and bioinformatics, we invite you to be a part of our dynamic team. In this role, you will focus on data processing and analysis to support our researchers. Your contributions will enhance our capabilities in raw data handling, high-performance computing, statistical evaluations, and integrated analysis, while also ensuring data reproducibility through effective management practices.

Key Responsibilities

• Support the proteomics and metabolomics community by maintaining and enhancing mass spectrometric data processing and analysis pipelines.
• Utilize your expertise in informatics and data science to guarantee the reproducibility of conducted data analyses.
• Engage with the bioinformatics group to assist collaborators at ETH and the University of Zurich with data interpretation and various bioinformatics projects.

Desired Profile

Required Skills and Experiences:

• Proven team player capable of collaborating with wet-lab scientists to translate their needs into actionable analyses.
• Academic qualifications in relevant fields such as computer science, statistics, or biology, with a master's or Ph.D. preferred.
• Proficiency in Microsoft Windows and Linux, including command-line interface experience.
• Practical knowledge of programming languages (C++, C#, Java, Python) and tools like Git.
• Responsible use of AI-assisted tools in a scientific context.

Preferred Skills and Experiences:

• Familiarity with managing and analyzing large-scale datasets, particularly omics data.
• Background in bioinformatics, especially in mass spectrometry.
• Experience in imaging, spatial or cross-omics disciplines.
• Proven ability to write and maintain code.
• Experience in R/Bioconductor and client-side web programming.
• Knowledge of UI/UX design, particularly in web-based or desktop interfaces for scientific visualization.
• Experience with virtualization tools (e.g., Docker, Apptainer) and resource management software (e.g., Slurm).

The ability to work independently and collaborate with technical staff and external research teams is essential. Proficiency in English is required, as it is the primary language of the center.

Our Commitment

We encourage applications from early-career candidates who are excited to grow their skills in a stimulating research environment. We offer a highly engaging position at the intersection of technology and life science, with working conditions according to ETH Zurich and the University of Zurich regulations.

At FGCZ, you will be part of an international and multicultural team, fostering a friendly and flexible atmosphere. Employment is hosted at ETH Zurich and is available immediately.

Our Values

ETH Zurich promotes an inclusive culture, emphasizing equality of opportunity, diversity, and respect for the rights and dignity of all individuals. We are also committed to sustainability and strive towards a climate-neutral future.

Join Us

Further information about FGCZ is available on our website. We encourage you to explore this opportunity and look forward to your potential contribution to our innovative research environment.